Garcia, B. M., Becker, C. C., Weber, L., Swarr, G. J., Soule, M. C. K., Apprill, A., & Kujawinski, E. B. (n.d.). Advancing Reef Monitoring Techniques through Exometabolomics: Quantification of Labile Dissolved Organic Metabolites on Coral Reefs. . doi:10.1101/2023.12.20.572630

Caldwell, J. M., Liu, G., Geiger, E., Heron, S. F., Eakin, C. M., De La Cour, J., . . . Donahue, M. J. (n.d.). Multi-Factor Coral Disease Risk Forecasting for Early Warning and Management. . doi:10.1101/2023.10.23.563632

Greene, A., Moriarty, T., Leggatt, W., Ainsworth, T. D., Donahue, M. J., & Raymundo, L. (n.d.). Spatial extent of dysbiosis in the branching coral Pocillopora damicornis during an acute disease outbreak. . doi:10.21203/rs.3.rs-3064933/v1

Beavers, K. M., Van Buren, E. W., Rossin, A. M., Emery, M. A., Veglia, A. J., Karrick, C. E., . . . Mydlarz, L. D. (n.d.). Stony coral tissue loss disease induces transcriptional signatures of in situ degradation of dysfunctional Symbiodiniaceae. Nature Communications, 14(1), 2915. doi:10.1038/s41467-023-38612-4

Cayemitte, K., Aoki, N., Ferguson, S. R., Mooney, T. A., & Apprill, A. (n.d.). Ramicrusta invasive alga causes mortality in Caribbean coral larvae. Frontiers in Marine Science, 10, 1158947. doi:10.3389/fmars.2023.1158947

Reigel, A., Easson, C., Apprill, A., Freeman, C., Bartley, M., & Fiore, C. (n.d.). Sponge-derived matter is assimilated by coral holobionts. . doi:10.21203/rs.3.rs-2666471/v1

Rosales, S. M., Huebner, L. K., Evans, J. S., Apprill, A., Baker, A. C., Becker, C. C., . . . Voss, J. D. (n.d.). A meta-analysis of the stony coral tissue loss disease microbiome finds key bacteria in unaffected and lesion tissue in diseased colonies. ISME Communications, 3(1), 19. doi:10.1038/s43705-023-00220-0

Weber, L., Soule, M. K., Longnecker, K., Becker, C. C., Huntley, N., Kujawinski, E. B., & Apprill, A. (n.d.). Benthic exometabolites and their ecological significance on threatened Caribbean coral reefs. ISME Communications, 2(1), 101. doi:10.1038/s43705-022-00184-7

Rosales, S. M., Huebner, L. K., Evans, J. S., Apprill, A., Baker, A. C., Bellantuono, A. J., . . . Voss, J. D. (n.d.). A meta-analysis of the stony coral tissue loss disease microbiome finds key bacteria in lesions and unaffected tissue of diseased colonies. . doi:10.1101/2022.09.30.510359

Brown, A. L., Sharp, K., & Apprill, A. (n.d.). Reshuffling of the coral microbiome during dormancy. . doi:10.1101/2022.08.16.504223

Huntley, N., Brandt, M. E., Becker, C. C., Miller, C. A., Meiling, S. S., Correa, A. M. S., . . . Apprill, A. (n.d.). Experimental transmission of Stony Coral Tissue Loss Disease results in differential microbial responses within coral mucus and tissue. ISME Communications, 2(1), 46. doi:10.1038/s43705-022-00126-3

Navarro-Martínez, Z. M., Armenteros, M., Espinosa, L., González-Díaz, P., & Apprill, A. (n.d.). Coral reef fish assemblages exhibit signs of depletion in two protected areas from the eastern of Los Canarreos archipelago (Cuba, Caribbean Sea). PeerJ, 10, e14229. doi:10.7717/peerj.14229

Pereira, A., Soares, M. C., Santos, T., Poças, A., Pérez-Losada, M., Apprill, A., . . . Xavier, R. (n.d.). Habitat and Client Diversity Influence the Skin Microbiome of the Caribbean Cleaner Goby Elacatinus Evelynae. . doi:10.21203/rs.3.rs-828485/v1

Becker, C. C., Brandt, M., Miller, C. A., & Apprill, A. (n.d.). Stony Coral Tissue Loss Disease biomarker bacteria identified in corals and overlying waters using a rapid field-based sequencing approach. . doi:10.1101/2021.02.17.431614

Lillis, A., Caruso, F., Mooney, T. A., Llopiz, J., Bohnenstiehl, D., & Eggleston, D. B. (n.d.). Drifting hydrophones as an ecologically meaningful approach to underwater soundscape measurement in coastal benthic habitats. Journal of Ecoacoustics, 2(1), stbdh1. doi:10.22261/jea.stbdh1

Taenzer, L., Wankel, S. D., Kapit, J., Pardis, W. A., Herrera, S., Auscavitch, S., . . . Hansel, C. M. (2023). Corals and sponges are hotspots of reactive oxygen species in the deep sea. PNAS Nexus, 2(11), pgad398. doi:10.1093/pnasnexus/pgad398

Apprill, A., Sikkel, P. C., & Brown, A. L. (2023). Microbiome dynamics of coral reef and cleanerfish from ecological surveys, in situ manipulations, and laboratory experiments conducted from 2020-2021. .

Becker, C. C., Weber, L., Zgliczynski, B., Sullivan, C., Sandin, S., Muller, E., . . . Apprill, A. (2023). Microorganisms and dissolved metabolites distinguish Florida’s Coral Reef habitats. PNAS Nexus, 2(9), pgad287. doi:10.1093/pnasnexus/pgad287

Jezequel, Y., Aoki, N., Cones, S. F., & Mooney, T. A. (2023). Daytime boat sound does not affect the behavior of wild thorny oysters (Spondylus americanus): A field-based study. JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA, 154(2), 1041-1047. doi:10.1121/10.0020725

Yang, D., Cai, L., Jamieson, S., & Girdhar, Y. (2023). Robot Goes Fishing: Rapid, High-Resolution Biological Hotspot Mapping in Coral Reefs with Vision-Guided Autonomous Underwater Vehicles. . doi:10.48550/arxiv.2305.02330

Chen, M., Martin, P., Ren, H., Zhang, R., Samanta, D., Chen, Y. -C., . . . Goodkin, N. F. (2023). Enhanced Monsoon-Driven Upwelling in Southeast Asia During the Little Ice Age. PALEOCEANOGRAPHY AND PALEOCLIMATOLOGY, 38(4). doi:10.1029/2022PA004546

Becker, C. C., Weber, L., Llopiz, J., Mooney, T. A., & Apprill, A. (2023). Seawater microbial communities within coral reef seawater change over six years in response to disturbance. .

Apprill, A., Girdhar, Y., Mooney, T. A., Hansel, C. M., Long, M. H., Liu, Y., . . . Greene, A. (2023). Toward a New Era of Coral Reef Monitoring. ENVIRONMENTAL SCIENCE & TECHNOLOGY, 57(13), 5117-5124. doi:10.1021/acs.est.2c053695117

Apprill, A., Kujawinski, E., Muller, E., Sandin, S., Weber, L., Clark, A., . . . Becker, C. C. (2023). Biogeochemistry, metabolomics, and metagenomics of Florida’s Coral Reef from sampling conducted over 15 days in June 2019. .

Girdhar, Y., McGuire, N., Cai, L., Jamieson, S., McCammon, S., Claus, B., . . . Mooney, T. A. (2023). CUREE: A Curious Underwater Robot for Ecosystem Exploration. . doi:10.48550/arxiv.2303.03943

Reigel, A. M., Easson, C. G., Apprill, A., Freeman, C. J., Bartley, M. M., & Fiore, C. L. (2023). Isotopic analysis of ¹³C and ¹⁵N for sponges, coral, and zooxanthellae (family Symbiodiniaceae) used in a ‘pulse-chase’ experiment to examine the uptake of sponge-derived nutrients by the coral holobiont. .

Jézéquel, Y., Aoki, N., & Mooney, T. A. (2023). Acoustic properties and shallow water propagation distances of Caribbean spiny lobster sounds (Panulirus argus). The Journal of the Acoustical Society of America, 153(1), 529-537. doi:10.1121/10.0016898

McCammon, S., Aoki, N., Mooney, T. A., & Girdhar, Y. (2022). Adaptive Online Sampling of Periodic Processes with Application to Coral Reef Acoustic Abundance Monitoring. In 2022 IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS) Vol. 00 (pp. 11671-11678). Institute of Electrical and Electronics Engineers (IEEE). doi:10.1109/iros47612.2022.9982217

Grabb, K. C., Pardis, W. A., Kapit, J., Wankel, S. D., Hayden, E. B., & Hansel, C. M. (2022). Design Optimization of a Submersible Chemiluminescent Sensor (DISCO) for Improved Quantification of Reactive Oxygen Species (ROS) in Surface Waters. SENSORS, 22(17), 18 pages. doi:10.3390/s22176683

Lillis, A., & Mooney, T. A. (2022). Sounds of a changing sea: Temperature drives acoustic output by dominant biological sound-producers in shallow water habitats. FRONTIERS IN MARINE SCIENCE, 9, 11 pages. doi:10.3389/fmars.2022.960881